Showing : bin size • reset
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Strategy for choosing window size and read extension length for csaw?
csaw differential binding analysis bin size
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ★ 7.9k
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CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter bin size targeted sequencing
updated 10.0 years ago by ▴ 170 • written 10.0 years ago by • 0
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No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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